IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn34 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_AllMapped_edited.nwk -s All_Species_m2_genic_other.nexus --scf 100 --prefix concord_genic_other_ref -T 2
Seed:    816706 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Mon May  3 11:22:10 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_genic_other.nexus ... Nexus format detected
Alignment has 26 sequences with 36602 columns, 21279 distinct patterns
36131 parsimony-informative, 0 singleton sites, 471 constant sites
        Gap/Ambiguity  Composition  p-value
   1  ActMar    1.40%    passed      6.43%
   2  AldGig    1.66%    passed     43.66%
   3  ApaSpi    3.34%    passed     70.19%
   4  BatTri   48.12%    passed     28.04%
   5  CarIns   12.04%    failed      0.07%
   6  CheAbi    5.85%    passed     69.24%
   7  CheMyd    0.76%    passed     10.71%
   8  CheSer    3.71%    passed     21.85%
   9  ChrPic    0.46%    passed     27.64%
  10  CuoAmb    2.53%    passed     21.13%
  11  CuoMcc    0.93%    passed     12.79%
  12  DerCor    1.51%    passed     69.19%
  13  DerMaw    2.33%    passed     93.43%
  14  EmyOrb   41.43%    passed     31.69%
  15  EmySub    2.11%    passed      6.15%
  16  GopAga    0.89%    passed     53.72%
  17  MalTer    6.60%    passed     32.32%
  18  MauRee    0.64%    passed     31.26%
  19  MesTub    3.50%    failed      4.16%
  20  PelCas    5.44%    failed      0.00%
  21  PelSin    4.15%    passed     34.16%
  22  PlaMeg    0.73%    passed     10.63%
  23  PodExp   14.46%    failed      0.00%
  24  SteCar    3.33%    passed     36.63%
  25  TerCar    1.89%    passed      5.83%
  26  TraScr    0.84%    passed     24.72%
****  TOTAL     6.56%  4 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_AllMapped_edited.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
0.410 sec
Tree with concordance factors written to concord_genic_other_ref.cf.tree
Annotated tree (best viewed in FigTree) written to concord_genic_other_ref.cf.tree.nex
Tree with branch IDs written to concord_genic_other_ref.cf.branch
Concordance factors per branch printed to concord_genic_other_ref.cf.stat
Date and Time: Mon May  3 11:22:11 2021
